The rockwool is only for something to keep the end of the stem in the dark with a nice moist environment that is beneficial for rooting.
The goal is to have the roots grow out of the rockwool and attach themselves to the hydroton, (or whatever media you use).
My clones are started in rockwool and put into an aeroponic cloner. After 15 days, the roots are already a foot long and I transfer the plants into my ebb and flow system. Once in there, they attach quickly to the hydroton and from there, grow and support the plant nicely.
The 1.5 inch cubes are fine. You *want* the roots to grow outside the cube as soon as possible so that the plant can start growing FAST.
Good luck man!